PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000304113
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 273aa    MW: 30235.3 Da    PI: 6.1766
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000304113genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-3082140259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY++eHnh+
  MDP0000304113  82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTTLVITYSSEHNHS 140
                    69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3175142IPR003657WRKY domain
PROSITE profilePS5081131.99676142IPR003657WRKY domain
SuperFamilySSF1182906.41E-2677142IPR003657WRKY domain
SMARTSM007741.6E-3581141IPR003657WRKY domain
PfamPF031062.3E-2583139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDPTFFSSNS KQFLSDQEEN DNTTSSTPEN SSDSPPPSTN FSDYPKITTS TSSPKKSARR  60
AIHKRVVSVP IKGDNSNTPP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE  120
RSRVDPTTLV ITYSSEHNHS WPASRNHHNN HSNSSSAAAT KRGPTKTEAP EAQQPDHQDQ  180
DQDSRFADLN HESLIVNDEX VWFHDMEXTS SRVLESPIFA ESSSSVGSDS ADKAAMVFPM  240
GEEDESLFAD LGELPECSFV FRHRGVGPQA QIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-19831431978Probable WRKY transcription factor 4
2lex_A9e-19831431978Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371500.10.0PREDICTED: probable WRKY transcription factor 65
SwissprotQ9LP567e-76WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLD9ZJF41e-153D9ZJF4_MALDO; WRKY domain class transcription factor
STRINGPOPTR_0011s06990.15e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-66WRKY DNA-binding protein 65